PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.157010.1
Common NameCsa_1G000700, LOC101208544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 106aa    MW: 11950.9 Da    PI: 8.5375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.157010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-102370455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cucsa.157010.1 23 SHSLAERVRRQKISQRMKVLQTLVPGC----HKVTGKALMLDEIINYVQSLQ 70
                    8*************************9....566*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-171686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-111774No hitNo description
Gene3DG3DSA:4.10.280.102.4E-171986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4151969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-72370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-102575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MMIKTQHDPA DHVRARRGQA TDSHSLAERV RRQKISQRMK VLQTLVPGCH KVTGKALMLD  60
EIINYVQSLQ NQVEFLSMKL ASLDPVLHDF GMDFPEVLLV GTPASE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818145e-39LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132565e-39LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138026.22e-72PREDICTED: transcription factor bHLH137-like
SwissprotQ93W882e-46BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0A0LTX62e-72A0A0A0LTX6_CUCSA; Uncharacterized protein
STRINGSolyc03g097820.1.13e-46(Solanum lycopersicum)
STRINGSolyc06g072520.1.11e-46(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-47bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]